Results

Result

Description: List of the results (parameter) that were derived by analyzing the raw data, and which steps were taken to obtain them
Required: yes
Path: metadata.general_parameters.results
Type: array of polymorphic object (Result)
Type_field: type Contains: see Fields available result

Fields available in result

id

Description: Unique ID for the result to be used as a link
Required: yes
Path: metadata.general_parameters.results.id
Type: string (keyword)

name

Description: Descriptive name (id) of the result (e.g. Kd of Lysozyme and VHH2). Must be unique within a record
Required: yes
Path: metadata.general_parameters.results.name
Type: string (fulltext)

type

Description: The type of physical parameter the result represents
Required: yes
Path: metadata.general_parameters.results.type
Type: enumerator (string)
options: ('Concentration', 'Stoichiometry', 'Constant of association KA', 'Constant of dissociation KD', 'Half maximal effective concentration EC50', 'Hill coefficient', 'Association rate kOn', 'Dissociation rate kOff', 'Change in enthalpy deltaH', 'Change in entropy deltaS', 'Change in Gibbs free energy deltaG', 'Molecular weight')

value

Description: Numerical value of the result
Required: yes
Path: metadata.general_parameters.results.value
Type: number (float)

value_error

Description: The expected error of the result in terms of a 95 % confidence interval
Required: yes
Path: metadata.general_parameters.results.value_error
Type: object (Value_error)
Contains see Value error

unit

One of the following depending on the result type

Concentration

Description: Unit of the concentration
Required: yes
Path: metadata.general_parameters.results.unit
Type: enumerator (string)
Options: ('M', 'mM', 'µM', 'nM', 'pM', 'fM', 'aM', 'g/L', 'mg/mL', 'µg/mL', 'ng/mL', 'mol/kg', 'mmol/kg', 'v/v %','w/w %', 'v/w %', 'w/v %', 'U/ml','% saturated')

Stoichiometry

Description: Unit of the stoichiometry
Required: yes
Path: metadata.general_parameters.results.unit
Type: enumerator (string)
Options: ('per complex')

Constant of association

Description: Unit of the constant of association
Required: yes
Path: metadata.general_parameters.results.unit
Type: enumerator (string)
Options: ('M^-1', 'M^-2', 'mM^-1', 'mM^-2', 'µM^-1', 'µM^-2', 'nM^-1', 'nM^-2')

Constant of dissociation

Description: Unit of the constant of association
Required: yes
Path: metadata.general_parameters.results.unit
Type: enumerator (string)
Options: ('M', 'M^2', 'mM', 'mM^2', 'µM', 'µM^2', 'nM', 'nM^2')

Association rate constant

Description: Unit of the association rate constant
Required: yes
Path: metadata.general_parameters.results.unit
Type: enumerator (string)
Options: ('M^-1 s^-1', 'M^-2 s^-1', 'mM^-1 s^-1', 'mM^-2 s^-1', 'µM^-1 s^-1', 'µM^-2 s^-1', 'nM^-1 s^-1', 'nM^-2 s^-1')

Dissociation rate constant

Description: Unit of the dissociation rate constant
Required: yes
Path: metadata.general_parameters.results.unit
Type: enumerator (string)
Options: ('s^-1')

Change in enthalpy

Description: Unit of the change in enthalpy
Required: yes
Path: metadata.general_parameters.results.unit
Type: enumerator (string)
Options: ('kcal/mol','kJ/mol')

Change in entropy

Description: Unit of the change in entropy
Required: yes
Path: metadata.general_parameters.results.unit
Type: enumerator (string)
Options: ('kcal/molK','kJ/molK')

Change in Gibbs free energy

Description: Unit of the change in Gibbs free energy
Required: yes
Path: metadata.general_parameters.results.unit
Type: enumerator (string)
Options: ('kcal/mol','kJ/mol')

Molecular weight

Description: Unit of the molecular weight
Required: yes
Path: metadata.general_parameters.results.unit
Type: enumerator (string)
Options: ('g/mol', 'Da', 'kDa', 'MDa')

Half maximal effective concentration

Description: Unit of the molecular weight
Required: yes
Path: metadata.general_parameters.results.unit
Type: enumerator (string)
Options: ('g/mol', 'Da', 'kDa', 'MDa')

Hill coefficient

Description: Unit of the molecular weight
Required: yes
Path: metadata.general_parameters.results.unit
Type: enumerator (string)
Options: ('unitless')

entities_involved

Description: List of chemical or molecular assemblies the result describes and how many copies of each are involved
Required: yes
Path: metadata.general_parameters.results.entities_involved
Type: array of object (Entity_and_stoichiometry)
contains: see Fields available in entity and stoichiometry

Fields available in entity and stoichiometry

entity

Description: Name (ids) of the entity (from the entities of interest defined in the general parameters)
Required: yes
Path: metadata.general_parameters.results.entities_involved.entity
Type: string (fulltext)

copy_number

Description: Number of copies of the entity that contribute to the result, -1 if unknown (e.g. if two individual copies of a polymer binds to another, the copy number would be 2)
Required: yes
Path: metadata.general_parameters.results.entities_involved.entity
Type: number (float)
Minimum: -1